Exact Tandem Repeats
Within the Zebrafish Genome

zebrafish Repeats

Display Characteristics
LINKAGE GROUP TO DISPLAY

Linkage Group:


REGION OF INTEREST

Beg: bp
End: bp

REPEAT PERIODICITY TO DISPLAY

3 Bp
7 Bp
24 Bp
4 Bp
8 Bp
27 Bp
5 Bp
10 Bp
30 Bp
6 Bp
18 Bp
>10 Bp
ALL




Contact Information

  Eric Rouchka
  eric.rouchka (at) louisville.edu



BRG





Repeats for All Linkage Groups

PROJECT OVERVIVEW


A total of 116,915 exact tandem repeats with a base length of at least three and a copy number of at least ten have been detected in the Zv8 assembly of the zebrafish genome. This web interface can be used to browse for repeats and primers for amplifying these repeats within a certain genomic region. In addition, the repeats can be downloaded as tracks for either the UCSC Genome browser (December 2008 build) or FishMap Zv8 browser.

PLEASE CITE:

Rouchka, EC. (2010) Database of exact tandem repeats in the Zebrafish genome. BMC Genomics 11:347. doi:10.1186/1471-2164-11-347

DOWNLOAD DATA

Zv8 Assembly Tracks

Zv7 Assembly Tracks

LINKS

ACKNOWLEDGEMENTS

This work was supported by the National Institutes of Health [P20RR16481, Nigel Cooper, PI]; [P30ES014443, Kenneth Ramos, PI]. The contents of this work are solely the responsibility of the authors and may not represent the official views of the National Institutes of Health.