A total of 116,915 exact tandem repeats with a base length of at least three and a copy number of
at least ten have been detected in the Zv8 assembly of the zebrafish genome. This web interface
can be used to browse for repeats and primers for amplifying these repeats within a certain genomic
region. In addition, the repeats can be downloaded as tracks for either the UCSC Genome browser
(December 2008 build) or FishMap Zv8 browser.
Rouchka, EC. (2010) Database of exact tandem repeats in the Zebrafish genome. BMC Genomics 11:347. doi:10.1186/1471-2164-11-347
Zv8 Assembly Tracks
Zv7 Assembly Tracks
This work was supported by the National Institutes of Health [P20RR16481, Nigel Cooper, PI]; [P30ES014443, Kenneth Ramos, PI]. The contents of this work are solely the responsibility of the authors and may not represent the official views of the National Institutes of Health.