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University of Louisville Bioinformatics

Bioinformatics Software Resources at the University of Louisville

GeneIndexer

Computable Genomix, Memphis, TN

Description:
GeneIndexer is an easy to use web-based tool that enables genetic researchers to reveal biological significance in a set of co-regulated or associated genes. Using GeneIndexer's next generation text mining technology, researchers can significantly compress the time needed for discovery and hypotheses development.

Website:
http://www.computablegenomix.com/products.php

License information:
Site license (1 concurrent user)

Contact:
Sabine Waigel


GeneSpring GX

Agilent Technologies, Foster City, CA

Description:
GeneSpring GX provides powerful, accessible statistical tools for fast visualization and analysis of expression and genomic structural variation data. Designed specifically for the needs of biologists, GeneSpring GX offers an interactive desktop computing environment that promotes investigation and enables understanding of microarray data within a biological context.

Web site:
http://www.chem.agilent.com/en-us/products/software/lifesciencesinformatics/genespringgx/pages/default.aspx

License Information:
2 -- fixed

Contact:
Sabine Waigel


Ingenuity Pathway Analysis (IPA)

Ingenuity Systems, Redwood City, CA

Description:
IPA® is an all-in-one, web-based software application that enables you to analyze, integrate, and understand data derived from gene expression, microRNA, and SNP microarrays; metabolomics and proteomics experiments; and small-scale experiments that generate gene and chemical lists. With IPA you can search for targeted information on genes, proteins, chemicals, and drugs, and build interactive models of your experimental systems. IPA.s data analysis and search capabilities help you understand the significance of your data, specific target, or candidate biomarker in the context of larger biological or chemical systems, backed by the Ingenuity® Knowledge Base of highly structured, detail-rich biological and chemical Findings.

Web site:
http://www.ingenuity.com/products/pathways_analysis.html

License Information:
Site License (3 concurrent users)

Contact:
Sabine Waigel


Partek Genomics Suite

Partek Incorporated, St. Louis, MO

Description:
Partek® Genomics SuiteTM (Partek GS) is a comprehensive suite of advanced statistics and interactive data visualization specifically designed to reliably extract biological signals from noisy data. Partek GS is unique in supporting all microarray and next generation sequencing technologies including gene expression and digital gene expression (DGE), exon/alternative splicing and RNA-Seq, copy number and association, ChIP-chip, ChIP-seq, and microRNA in a single software package, allowing for analysis of multiple applications in one complete solution.

Web site:
http://www.partek.com/partekgs

License Information:
2 -- fixed

Contact:
Sabine Waigel


PathwayStudio

Ariadne Genomics, Rockville, MD

Description:
Pathway Studio pathway analysis software helps you to:

Web Site:
http://www.ariadnegenomics.com/products/pathway-studio/

License Information:
RLM Floating License
1 -- 5 users max
Expires: 06/30/2011

Contact:
Eric Rouchka


VectorNTI AdvanceTM 11

Invitrogen, Carlsbad, CA

Description:
Vector NTI Advance is the award-winning, most comprehensive and highly integrated application for desktop sequence analysis and molecular biology data management. Its many features include a comprehensive suite of DNA and protein sequence analysis tools across five integrated modules.

Web site:
http://www.invitrogen.com/site/us/en/home/LINNEA-Online-Guides/LINNEA-Communities/Vector-NTI-Community/Vector-NTI.html

License Information:
Dynamic License
Unlimited Seats; 10 concurrent users

Contact:
Eric Rouchka



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