Bioinformatics Lab UofL

Bioinformatics Research Projects

Below is a sampling of some of the ongoing bioinformatics research projects at the University of Louisville.

Research
rMAPS rna Map Analysis and Plotting Server

rMAPS: rna Map Analysis and Plotting Server

JW Park, S Jung, EC Rouchka, T Tseng, Y Xing

CSI-UTR

CSI-UTR: Cleavage site interval analysis of 3'UTR differential expression

BJ Harrison, JC Petruska, EC Rouchka

Nobel Mentoring Network

Nobel mentoring network

JH Chariker, Y Zhang, J Pani, EC Rouchka

Quadruplex Forming Sequences

Genome-wide analysis of g-quadruplex forming sequences

JH Chariker, DM Miller, EC Rouchka

Region Based Custom Chip Definition Files

RegionCDF: Region based custom chip definition files

E Saka, RM Flight, K West, BJ Harrison, JC Petruska, EC Rouchka

Islands-Based Sequencing

IBSeq: Islands-based detection of differential expression in RNA-Seq experiments

AM Eteleeb, RM Flight, BJ Harrison, JC Petruska, EC Rouchka

categoryCompare

CategoryCompare: High-throughput data meta-analysis using gene annotations

RM Flight, BJ Harrison, F Mohammad, MB Bunge, L Moon, JC Petruska, EC Rouchka

absolute ID convert

AbsIDConvert

F Mohammad, RM Flight, BJ Harrison, JC Petruska, EC Rouchka

zebrafish repeats

Exact tandem repeats in the zebrafish genome

E.C. Rouchka

MPrime

Multiple Primer Design

E. Rouchka, X. Cui, A. Khalyfa, N. Cooper

rMotifGen

rMotifGen: Random Motif Generator for Genomic Sequences

E.C Rouchka, C.T. Hardin

motifPSO

DNA Motif Detection Using Particle Swarm Optimization

E.C Rouchka, C.T. Hardin

RBF-TSS

RBF-TSS: Identification of transcription start sites using radial basis functions

R.N. Mahdi and E.C. Rouchka

DNA Computing

DNA-Based Computing for Secure Circuitry Design

C.M. Gearheart and E.C. Rouchka

Detection of L1

Detection of Novel L1 Sequences in Next-Gen Sequencing Projects

T. Kalbfleisch, C.M. Gearheart and E.C. Rouchka

Bayesian Methods

Discovering Expression Patterns and Evolutionary Processes using Bayesian Methods

D. Li, P. Shafto and E.C. Rouchka

YMage

YMAGE: Federated Database Viewing System for High Resolution Biological Images

Y. Yachim, E. Saka and E.C. Rouchka

USDA

Web-Based Publication of Genetic Information for DNA-Based Animal Forensics in U.S. Livestock

Ted Kalbfleisch, Joe Morris, Nevine Eltonsy, Eric Rouchka

Midar

MiDaR: Microarray Database Resource

Eric C. Rouchka, Ravishrikanth Gundlapalli, Nigel G.F. Cooper

Image Gallery

Latest News