Bioinformatics Lab UofL

Bioinformatics Journal Club, 2009-2010

Meeting Time: Wednesdays, 4:00 pm
Location: Access Grid Room, 2nd Floor Vogt

Bioinformatics Journals

 

DATE
SPEAKER
PAPER
9/30/2009
Dr. Eric Rouchka

Organizational Meeting

10/7/2009
Rami Mahdi

Feature selection in cancer classification from mRNA data based on localized dimension reduction.

10/21/2009
Dr. De-Shuang Huang

Predicting protein-protein interactions from sequence using correlation coefficient and high-quality interaction dataset.

10/28/2009
Dr. Pingle Wang

Martin KC, Ephrussi A. (2009). mRNA Localization: Gene Expression in the Spatial Dimension. Cell 136:719-730.

11/4/2009
Ted Kalbfleisch
TBD
11/11/2009
Tyler Hougland

2006. Adeno-associated Virus Serotypes: Vector Toolkit for Human Gene Therapy. Nature 14(3):1302-.

11/18/2009
Dr. Sivi Panguluri
Improved coverage of cDNA-AFLP by sequential digestion of immobilized cDNA. BMC .
12/2/2009
Dr. Guy Brock

Rauch TA, Wu X, Zhong X, Riggs AD, and Pfeifer GP. (2009). A human B cell methylome at 100-base pair resolution. Proc Natl Acad Sci USA 106(3):671-678.

12/9/2009
Chris Whitaker
TBD
12/16/2009
Dr. Robert Flight

A Workflow for the analysis of DNA microarray time-course data.

1/27/2010
Yoonsuh Jung
Robust LASSO and Efficient Quantile Regression: Applications to Prostate Cancer Data and Diabetes Data.
2/3/2010
Colleen Jonsson
Integration of High Throughput Technologies and Systems BIology to Advance Discovery in Mechanisms of Diseases
2/10/2010
Alex Cambon

Gene Set Analysis -- An Example

Efron B, Tibshirani R. (2006). On Testing the Significance of Sets of Genes. Stanford technical report 2006:1-34.

Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES et al. (2005). Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. PNAS 102(43):15545-15550.

2/17/2010
Sungbo Jung

Shi H, Schmidt B, Liu W, Muller-Wittig W. (2009). Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA. In proceedings of HICOMB 2009.

2/24/2010
Dr. Jiaxu Li

Yu X, Lin J, Zack DJ, Mendell JT, Qian J. (2008). Analysis of regulatory network topology reveals functionally distinct classes of microRNAs. Nucleic Acids Research, 36(20):6494-6503.

3/10/2010
Dr. Daya Gupta

Su J, Zapata PJ, Chen C-C, Meredith JC. (2009). Local cell metrics: a novel method for analysis of cell-cell interactions. 10:350.

3/17/2010
Dr. Ted Kalbfleisch

Li R, et. al. (2010). Building the sequence map of the human pan-genome. Nature Biotechnology 28(1):57-63.

3/24/2010
Roger Ouch

Nguyen VH, Lavenier D. (2009). PLAST: parallel local alignment search tool for database comparison. BMC Bioinformatics. 10:329.

3/31/2010
Dr. Christy Gearheart

Colorspace, alignment techniques, and software packages for analyzing next-generation sequence data.

4/7/2010
Dr. Ben Harison
TBD
4/14/2010
Dr. Nigel Cooper
TBD
4/21/2010
Dr. Siva Panguluri
Molecular mechanism of tumor necrosis factor-alpha induced muscular atrophy.
4/28/2010
Dr. Guy Brock
TBD

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