Bioinformatics Lab UofL

Bioinformatics Journal Club, 2007-2008

Meeting Time: Wednesdays, 4:00 pm
Location: Access Grid Room, 2nd Floor Vogt

Bioinformatics Journals

 

DATE
SPEAKER
PAPER
9/5/2007
Eric Rouchka

Organizational Meeting

9/19/2007
Eric Rouchka

Levi S, et al. (2007). The Diploid Genome Sequence of An Individual Human"

9/26/2007
Rami Mahdi

Compositonal Modeling of oligonucleotide positional densities for human promoter prediction

10/3/2007
Christy Bogard

TBA

10/10/2007
Sungbo Jung

TBA

10/17/2007
Chris Whitaker

TBA

10/24/2007
Ming Ouyang

TBA

10/31/2007
Elizabeth Cha

TBA

11/7/2007
Joe Morris

Nagaraj SH, Gasser RB, Ranganathan S. (2006) A hitchhiker's guide to expressed sequence tag (EST) analysis. Briefings in Bioinformatics 8(1):6-21.

11/14/2007
Dr. Jiaxu Li

TBA

11/14/2007
Dr. Millie Mukhupadday

TBA

1/31/2008
Dr. Eric Rouchka

Informational Meeting

2/6/2008
Christy Bogard

Hutchison CA III. (2007) DNA sequencing: bench to bedside and beyond. Nucleic Acids Research, 35(18):6227-6237.
Powerpoint Presentation

 

 
2/13/2008
I. Elizabeth Cha

Tang CS, Epstein RJ. (2007). A structural split in the human genome. PLoS ONE, 2(7):e603.
Powerpoint Presentation

 

2/20/2008
Dr Xiang Zhang

Integrated omics for cancer biology

Oh C, Zak SH, Mirzaei H, Buck C, Regnier FE, Zhang X. (2007) Neural network prediction of peptide separation in strong anion exchange chromatography. Bioinformatics 23(1):114-118.

Zhang X, Hines W, Adamec J, Asara JM, Naylor S, Regnier FE. (2005) An Automated Method for the Analysis of Stable Isotope Labeling Data in Proteomics. Journal of the American Society for Mass Spectrometry, 16(7):1181-1191.

Zhang X, Asara JM, Adamec J, Ouzzani M, Elmagarmid AK. (2005) Data pre-processing in liquid chromatography-mass spectrometry-based proteomics. Bioinformatics 21(21):4054-4059.

Pevtsov S, Fedulova I, Mirzaei H, Buck C, Zhang X. (2006) Performance Evaluation of Existing De Novo Sequencing Algorithms. Journal of Proteome Research, 2006(5):3018-3028.

 

2/27/2008
Sungbo Jung

Liu W, Schmidt B, Voss G, Muller-Wittig W. (2007) Streaming Algorithms for BIological Sequence Alignment on GPUs. IEEE Transactions on Parallel and Distributed Systems. 18(9):1270-1281.

3/5/2008
Chris Whitaker

Koyanagi M, Suga H, Hoshiyama D, Ono K, Iwabe N, Kuma K, Miyata T. (1998). Ancient Gene Duplication and Domain Shuffling in the Animal Cyclic Nucleotide Phosphodiesterase Family. FEBS Letters. 436:323-328.

3/12/2008
NONE
SPRING BREAK
3/19/2008
Rami Mahdi

Gasch AP, Eisen MB. (2002). Exploring the conditional corregulation of yeast gene expression through fuzzy k-means clustering. Genome Biology. 3(11):research0059.1-0059.22

3/26/2008
Dr. Eric Rouchka

Whitehead K, Kish A, Pan M, Kaur A, Reiss DJ, King N, Hohmann L, DiRuggiero J, Baliga NS. (2006). An integrated systems approach for understanding cellular responses to gamma radiation. Molecular Systems Biology. 2:47.

4/2/2008
ALL
Bioinformatics Summit Recap
4/9/2008
Alex Kemper

Lamy P, Andersen CL, Dyrskjot L, Torring N, Wiuf C. (2007). A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays. BMC Bioinformatics. 8:434.

4/16/2008
Dr. Jiaxu Li
TBD
4/23/2008
Dr. Ming Ouyang
TBD

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