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- Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. Richard Durbin, et al., 1999.
- Algorithms on Strings, Trees and Sequences: Computer Science and Computational Biology. Dan Gusfield, 1997.
- Developing Bioinformatics Computer Skills. Cynthia Gibas and Per Jambeck, 2001.
- Beginning Perl for Bioinformatics. James D. Tisdall, 2001.
- Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins, Second Edition. Andreas Baxevanis, et al., 2001.
- Bioinformatics and Functional Genomics. Jonathan Pevsner, 2003.
- Bioinformatics for Dummies. Jean-Michel Claverie and Cederic Notredame, 2003.
- Bioinformatics: Sequence, Structure and Databanks: A Practical Approach. Des Higgins and Willie Taylor, 2000.
- Bioinformatics: The Machine Learning Approach, Second Edition. Pierre Baldi, et al., 2001.
- BLAST. Ian Korf, et al., 2003.
- Computational Methods in Molecular Biology. Steven L. Salzberg, et al., 1998.
- Computational Molecular Biology: An Algorithmic Approach. Pavel A. Pevzner, 2000.
- Inferring Phylogenies. Joseph Felzenstein, 2003.
- Introduction to Bioinformatics. Arthur Lesk, 2002.
- Introduction to Bioinformatics. Teresa Attwood, David Parry-Smith, 2001.
Introduction to Bioinformatics: A Theoretical and Practical Approach. Stephen Karawetz and David Womble, 2002.
- Introduction to Computational Biology -- Maps, Sequences and Genomes. Michael S. Waterman, 1995.
- Introduction to Computational Molecular Biology. Joao Carlos Setubal, et al., 1997.
- Mastering Perl for Bioinformatics. James D. Tisdall, 2001.
- Microarrays for an Integrative Genomics. Isaac Kohane, et al., 2002.
- Statistical Methods in Bioinformatics: An Introduction. Gregory Grant and Warren Ewens, 2001.
- Structural Bioinformatics (Methods of Biochemical Analysis). Philip Bourne, et al., 2002.
- Time Warps, String Edits, and Macromolecules: The Theory and Practice of Sequence Comparison. David Sankoff and Joseph Kruskal, 1999.
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